Publications & Preprints
Outputs and persistent identifiers
Peer-reviewed publications and preprints, each with a DOI and, where applicable, code and data. Status labels reflect the current stage of each manuscript.
Note. Preprints are non-peer-reviewed working manuscripts. Peer-reviewed publications are labeled accordingly and linked to the journal of record.
Peer-reviewed publications
Published in Viruses (MDPI), 2026.
LAI-PrEP Bridge Period: Clinical Decision Support Tool — computational validation
Long-acting injectable PrEP demonstrates >96% efficacy, yet many prescribed patients never receive a first injection. This work defines the bridge period as the implementation bottleneck and validates a decision support tool across 21.2 million synthetic patients at UNAIDS global target scale.
Preprints
Working manuscripts deposited to bioRxiv, medRxiv, and Preprints.org, with persistent DOIs.
Synergistic Barriers to Algorithmic Recourse and Structural Discrimination in Healthcare AI
A mathematical and computational framework for quantifying synergistic algorithmic discrimination and correcting compounding bias in clinical decision support.
Finite Prevention Windows for HIV Post-Exposure Prophylaxis
Irreversible proviral integration defines a finite, route-specific PEP window derived from within-host viral kinetics; parenteral windows compress ~threefold versus mucosal exposure.
Structural Barriers, Stochastic Avoidance, and Outbreak Risk in HIV Prevention for People Who Inject Drugs
A population-specific analysis of structural, legal, and system barriers to PrEP initiation among people who inject drugs, evaluating syringe service program integration as the primary delivery pathway.
Noise Correlation Length Distinguishes Neurometabolic Protection from Vulnerability Across HIV Infection Phases
A signal-processing biomarker framework released with the first publicly available consolidated dataset of phase-specific HIV neurometabolic MRS data (49 observations, 7 cohorts, 1985–2021). Preparing resubmission.
Quantum Coherence Preservation in Fibonacci-Structured Microtubules During HIV-Induced Neuroinflammation
Computational modeling of coherence preservation in microtubule geometries as a candidate mechanism for the HAND cognitive paradox. Full journal submission is held pending an extension addressing coherence at physiological temperatures.
In preparation
Manuscripts in active preparation; deposits and identifiers are listed where already public.
Calibration-to-Deployment Mismatch in HIV Prevention Trials: How Structural Censoring Biases Counterfactual Incidence Estimates
A formal derivation of survival-biased effective MDRI and a joint IRR bias factor for the Kassanjee/Gao cross-sectional incidence estimator, applied across 34 high-burden US metropolitan areas using AIDSVu surveillance data.
Quantitative Competence and Editorial Gatekeeping at Major US Medical Journals
A cross-sectional audit of editorial quantitative competence in medical machine-learning publishing, with modeled triage-error implications for quantitatively intensive manuscripts.
Code and data availability, where applicable, is described on the Methods & Code page. Deposits are archived on GitHub and Zenodo.